3TTI Transferase Transferase Inhibitor date Sep 14, 2011
title Crystal Structure Of Jnk3 Complexed With Cc-930, An Orally A Anti-Fibrotic Jnk Inhibitor
authors V.Plantevin-Krenitsky, L.Nadolny, M.Delgado, L.Ayala, S.Clareen, R.Hilgraf, R.Albers, S.Hegde, N.D'Sidocky, J.Sapienza, J.Wright, M.Mccarrick, S.Bahmanyar, P.Chamberlain, S.L.Delker, J.Muir, D.G L.Xu, M.Celeridad, J.Lachowitzer, B.Bennett, M.Moghaddam, O.Khat J.Katz, R.Fan, A.Bai, Y.Tang, M.A.Shirley, B.Benish, T.Bodine, K.B H.Raymon, B.E.Cathers, Y.Satoh
compound source
Molecule: Mitogen-Activated Protein Kinase 10
Chain: A
Synonym: Map Kinase 10, Mapk 10, Map Kinase P49 3f12, Stres Activated Protein Kinase Jnk3, C-Jun N-Terminal Kinase 3;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Jnk3, Jnk3a, Mapk10, Prkm10
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21d
symmetry Space Group: P 21 21 21
R_factor 0.242 R_Free 0.335
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.189 71.202 106.813 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand GOL, KBI BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • MAP kinase kinase activity


  • Primary referenceDiscovery of CC-930, an orally active anti-fibrotic JNK inhibitor., Plantevin Krenitsky V, Nadolny L, Delgado M, Ayala L, Clareen SS, Hilgraf R, Albers R, Hegde S, D'Sidocky N, Sapienza J, Wright J, McCarrick M, Bahmanyar S, Chamberlain P, Delker SL, Muir J, Giegel D, Xu L, Celeridad M, Lachowitzer J, Bennett B, Moghaddam M, Khatsenko O, Katz J, Fan R, Bai A, Tang Y, Shirley MA, Benish B, Bodine T, Blease K, Raymon H, Cathers BE, Satoh Y, Bioorg Med Chem Lett. 2012 Feb 1;22(3):1433-8. Epub 2011 Dec 10. PMID:22244937
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (3tti.pdb1.gz) 116 Kb
  • LPC: Ligand-Protein Contacts for 3TTI
  • CSU: Contacts of Structural Units for 3TTI
  • Structure Factors (436 Kb)
  • Retrieve 3TTI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TTI from S2C, [Save to disk]
  • Re-refined 3tti structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TTI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TTI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TTI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tti_A] [3tti]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3TTI: [S_TKc ] by SMART
  • Other resources with information on 3TTI
  • Community annotation for 3TTI at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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