3TU1 Ligase date Sep 15, 2011
title Exhaustive Fluorine Scanning Towards Potent P53-Mdm2 Antagon
authors S.Wolf, Y.Huang, D.Koes, G.M.Popowicz, C.J.Camacho, T.A.Holak, A.D
compound source
Molecule: E3 Ubiquitin-Protein Ligase Mdm2
Chain: A
Fragment: P53 Binding Domain (Unp Residues 18-105)
Synonym: Double Minute 2 Protein, Hdm2, Oncoprotein Mdm2, P Protein Mdm2;
Ec: 6.3.2.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mdm2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 2 2 2
R_factor 0.205 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.950 59.250 82.950 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand 07G enzyme Ligase E.C.6.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceExhaustive Fluorine Scanning toward Potent p53-Mdm2 Antagonists., Huang Y, Wolf S, Koes D, Popowicz GM, Camacho CJ, Holak TA, Domling A, ChemMedChem. 2011 Sep 27. doi: 10.1002/cmdc.201100428. PMID:21954050
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (3tu1.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 3TU1
  • CSU: Contacts of Structural Units for 3TU1
  • Structure Factors (224 Kb)
  • Retrieve 3TU1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TU1 from S2C, [Save to disk]
  • Re-refined 3tu1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3TU1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3TU1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TU1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tu1_A] [3tu1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3TU1
  • Community annotation for 3TU1 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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