3TW5 Transferase date Sep 21, 2011
title Crystal Structure Of The Gp42 Transglutaminase From Phytopht
authors K.Reiss, E.Kirchner, G.Zocher, T.Stehle
compound source
Molecule: Transglutaminase Elicitor
Chain: A, B
Fragment: Transglutaminase Domain
Ec: 2.3.2.13
Engineered: Yes
Mutation: Yes
Organism_scientific: Phytophthora Sojae
Organism_taxid: 67593
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: Gs115
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppic9k
symmetry Space Group: P 62 2 2
R_factor 0.215 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
195.480 195.480 137.300 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.95 Å
ligand CXS enzyme Transferase E.C.2.3.2.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural and phylogenetic analyses of the GP42 transglutaminase from Phytophthora sojae reveal an evolutionary relationship between oomycetes and marine Vibrio bacteria., Reiss K, Kirchner E, Gijzen M, Zocher G, Loeffelhardt B, Nuernberger T, Stehle T, Brunner F, J Biol Chem. 2011 Oct 12. PMID:21994936
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (3tw5.pdb1.gz) 53 Kb
  • Biological Unit Coordinates (3tw5.pdb2.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 3TW5
  • CSU: Contacts of Structural Units for 3TW5
  • Structure Factors (755 Kb)
  • Retrieve 3TW5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TW5 from S2C, [Save to disk]
  • Re-refined 3tw5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TW5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TW5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TW5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tw5_B] [3tw5_A] [3tw5]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3TW5
  • Community annotation for 3TW5 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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