3TYY Structural Protein date Sep 26, 2011
title Crystal Structure Of Human Lamin-B1 Coil 2 Segment
authors R.Lam, C.Xu, C.B.Bian, F.Mackenzie, J.R.Walker, C.Bountra, J.Weige C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, J.Min, Structural Gen Consortium (Sgc)
compound source
Molecule: Lamin-B1
Chain: A, B
Fragment: Coil 2 (Unp Residues: 311-388)
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lmn2, Lmnb, Lmnb1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: P 32 2 1
R_factor 0.235 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.982 45.982 203.231 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
note 3TYY supersedes 3MOV
Primary referenceCrystal structures of the coil 2B fragment and the globular tail domain of human lamin B1., Ruan J, Xu C, Bian C, Lam R, Wang JP, Kania J, Min J, Zang J, FEBS Lett. 2012 Feb 17;586(4):314-8. Epub 2012 Jan 16. PMID:22265972
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (3tyy.pdb1.gz) 51 Kb
  • CSU: Contacts of Structural Units for 3TYY
  • Structure Factors (218 Kb)
  • Retrieve 3TYY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TYY from S2C, [Save to disk]
  • Re-refined 3tyy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TYY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TYY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TYY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tyy] [3tyy_A] [3tyy_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3TYY
  • Community annotation for 3TYY at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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