3U0T	Immune System	date	Sep 29, 2011
title	Fab-Antibody Complex
authors	S.L.Laporte, J.P.Pons
compound		source
Molecule: Ponezumab Lc Fab Chain: C, A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek 293 Cells
Molecule: Ponezumab Hc Fab Chain: D, B Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek 293 Cells
Molecule: Amyloid Beta A4 Protein Chain: E, F Fragment: Unp Residues 701-711 Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 1 21 1	R_factor 0.219 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 83.370 64.250 95.890 90.00 112.42 90.00
method	X-Ray Diffraction	resolution	2.50 Å
Primary reference	Structural Basis of C-terminal beta-Amyloid Peptide Binding by the Antibody Ponezumab for the Treatment of Alzheimer's Disease., La Porte SL, Bollini SS, Lanz TA, Abdiche YN, Rusnak AS, Ho WH, Kobayashi D, Harrabi O, Pappas D, Mina EW, Milici AJ, Kawabe TT, Bales K, Lin JC, Pons J, J Mol Biol. 2011 Dec 13. PMID:22197375

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (288 Kb) [Save to disk] Biological Unit Coordinates (3u0t.pdb1.gz) 143 Kb Biological Unit Coordinates (3u0t.pdb2.gz) 142 Kb CSU: Contacts of Structural Units for 3U0T Structure Factors (1785 Kb) Retrieve 3U0T in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3U0T from S2C, [Save to disk] Re-refined 3u0t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3U0T in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3U0T

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3U0T, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3u0t_F] [3u0t_A] [3u0t_D] [3u0t_C] [3u0t] [3u0t_E] [3u0t_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3U0T: [IG_like] [IGv ] by SMART

Other resources with information on 3U0T

Community annotation for 3U0T at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---