3U5N Transcription date Oct 11, 2011
title Crystal Structure Of The Complex Of Trim33 Phd-Bromo And H3( K9me3k14ac Histone Peptide
authors Z.Wang, D.J.Patel
compound source
Molecule: E3 Ubiquitin-Protein Ligase Trim33
Chain: A, B
Fragment: The C-Terminal Phd And Bromo Dual Domains Of Trim Residues 882-1087;
Synonym: Ectodermin Homolog, Ret-Fused Gene 7 Protein, Prot Transcription Intermediary Factor 1-Gamma, Tif1-Gamma, Trip Motif-Containing Protein 33;
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trim33, Kiaa1113, Rfg7, Tif1g
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prsfduet-1

Molecule: Histone H3.1
Chain: C, D
Fragment: N-Terminal Histone H3 Peptide Containing Trimethy And Acetylated K14, Unp Residues 2-21;
Synonym: Histone H3
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Other_details: This Sequence Occurs Naturally In Humans
symmetry Space Group: P 21 21 21
R_factor 0.202 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.586 113.737 39.861 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand ALY, M3L, ZN enzyme Ligase E.C.6.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
D, C


Primary referenceA Poised Chromatin Platform for TGF-beta Access to Master Regulators., Xi Q, Wang Z, Zaromytidou AI, Zhang XH, Chow-Tsang LF, Liu JX, Kim H, Barlas A, Manova-Todorova K, Kaartinen V, Studer L, Mark W, Patel DJ, Massague J, Cell. 2011 Dec 23;147(7):1511-24. PMID:22196728
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk]
  • Biological Unit Coordinates (3u5n.pdb1.gz) 66 Kb
  • Biological Unit Coordinates (3u5n.pdb2.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 3U5N
  • CSU: Contacts of Structural Units for 3U5N
  • Structure Factors (424 Kb)
  • Retrieve 3U5N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3U5N from S2C, [Save to disk]
  • Re-refined 3u5n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3U5N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3U5N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3U5N, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3u5n_D] [3u5n_B] [3u5n_C] [3u5n] [3u5n_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3U5N: [BROMO] [PHD ] by SMART
  • Other resources with information on 3U5N
  • Community annotation for 3U5N at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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