3U6S	Hydrolase Dna	date	Oct 12, 2011
title	Mutm Set 1 Tpg
authors	R.J.Sung, M.Zhang, Y.Qi, G.L.Verdine
compound		source
Molecule: Formamidopyrimidine-Dna Glycosylase Chain: A Ec: 3.2.2.23 Engineered: Yes Mutation: Yes		Organism_scientific: Geobacillus Stearothermophilus Organism_taxid: 1422 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (5'-D(Agpgptpapgpaptpcpcpapgpap 3'); Chain: B Engineered: Yes		Synthetic: Yes Other_details: Synthetic Dna
Molecule: Dna (5'-D(Tpgpcpgptpcptpgpgpap(08q) Pcptpapcpc)-3'); Chain: C Engineered: Yes		Synthetic: Yes Other_details: Synthetic Dna
symmetry	Space Group: P 21 21 21	R_factor 0.179 R_Free 0.194
crystal cell	length a length b length c angle alpha angle beta angle gamma 45.188 93.541 104.650 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.77 Å
ligand	08Q, ZN	enzyme	Hydrolase E.C.3.2.2.23 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	SEQUENCE-DEPENDENT STRUCTURAL VARIATION IN DNA UNDERGOING INTRAHELICAL INSPECTION BY MUTM., Sung RJ, Zhang M, Qi Y, Verdine GL, J Biol Chem. 2012 Mar 30. PMID:22465958

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk] Biological Unit Coordinates (3u6s.pdb1.gz) 113 Kb LPC: Ligand-Protein Contacts for 3U6S CSU: Contacts of Structural Units for 3U6S Structure Factors (503 Kb) Retrieve 3U6S in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3U6S from S2C, [Save to disk] Re-refined 3u6s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3U6S in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3U6S

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3U6S, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3u6s_A] [3u6s_C] [3u6s] [3u6s_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3U6S: [Fapy_DNA_glyco] [H2TH ] by SMART

Other resources with information on 3U6S

Community annotation for 3U6S at PDBWiki (http://pdbwiki.org)

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