3U8W Transferase Transferase Inhibitor date Oct 17, 2011
title Crystal Structure Of P38a Mitogen-Activated Protein Kinase I With A Triazolopyridazinone Inhibitor
authors C.Mohr, S.Jordan
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Map Kinase 14, Mapk 14, Cytokine Suppressive Anti- Inflammatory Drug-Binding Protein, Csaid-Binding Protein, C Kinase Mxi2, Max-Interacting Protein 2, Mitogen-Activated P Kinase P38 Alpha, Map Kinase P38 Alpha, Sapk2a;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk14, Csbp, Csbp1, Csbp2, Cspb1, Mxi2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.234 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.143 85.789 120.569 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand 09J BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIdentification of triazolopyridazinones as potent p38alpha inhibitors., Herberich B, Jackson C, Wurz RP, Pettus LH, Sherman L, Liu Q, Henkle B, Saris CJ, Wong LM, Chmait S, Lee MR, Mohr C, Hsieh F, Tasker AS, Bioorg Med Chem Lett. 2012 Jan 15;22(2):1226-9. Epub 2011 Nov 23. PMID:22196117
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (3u8w.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 3U8W
  • CSU: Contacts of Structural Units for 3U8W
  • Structure Factors (377 Kb)
  • Retrieve 3U8W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3U8W from S2C, [Save to disk]
  • Re-refined 3u8w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3U8W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3U8W
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3U8W, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3u8w_A] [3u8w]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3U8W: [S_TKc ] by SMART
  • Other resources with information on 3U8W
  • Community annotation for 3U8W at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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