3UA7 Transferase Viral Protein date Oct 21, 2011
title Crystal Structure Of The Human Fyn Sh3 Domain In Complex Wit Peptide From The Hepatitis C Virus Ns5a-Protein
authors J.M.Martin-Garcia, J.Ruiz-Sanz, I.Luque, A.Camara-Artigas
compound source
Molecule: Tyrosine-Protein Kinase Fyn
Chain: A, B, C, D
Fragment: Sh3 Domain (Unp Residues 81-143)
Synonym: Proto-Oncogene Syn, Proto-Oncogene C-Fyn, Src-Like Slk, P59-Fyn;
Ec: 2.7.10.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fyn
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3d

Molecule: Non-Structural Protein 5a
Chain: E, F
Fragment: Proline-Rich Region (Unp Residues 350-360)
Synonym: Ns5a
Engineered: Yes

Synthetic: Yes
Organism_scientific: Hepatitis C Virus
Organism_common: Hcv
Organism_taxid: 11103
symmetry Space Group: P 41 21 2
R_factor 0.185 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.390 51.390 185.590 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand ACE, CL, FMT, GOL, NA, ZN enzyme Transferase E.C.2.7.10.2 BRENDA
Primary referenceThe promiscuous binding of the Fyn SH3 domain to a peptide from the NS5A protein., Martin-Garcia JM, Luque I, Ruiz-Sanz J, Camara-Artigas A, Acta Crystallogr D Biol Crystallogr. 2012 Aug;68(Pt 8):1030-40. Epub 2012 Jul 17. PMID:22868769
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (3ua7.pdb1.gz) 26 Kb
  • Biological Unit Coordinates (3ua7.pdb2.gz) 25 Kb
  • Biological Unit Coordinates (3ua7.pdb3.gz) 23 Kb
  • Biological Unit Coordinates (3ua7.pdb4.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 3UA7
  • CSU: Contacts of Structural Units for 3UA7
  • Structure Factors (574 Kb)
  • Retrieve 3UA7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UA7 from S2C, [Save to disk]
  • Re-refined 3ua7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UA7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UA7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UA7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ua7_B] [3ua7_E] [3ua7_F] [3ua7_A] [3ua7] [3ua7_D] [3ua7_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3UA7: [SH3 ] by SMART
  • Other resources with information on 3UA7
  • Community annotation for 3UA7 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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