3UAJ Viral Protein Immune System date Oct 21, 2011
title Crystal Structure Of The Envelope Glycoprotein Ectodomain Fr Virus Serotype 4 In Complex With The Fab Fragment Of The Ch Monoclonal Antibody 5h2
authors J.J.B.Cockburn, E.A.Stura, M.E.Navarro-Sanchez, F.A.Rey
compound source
Molecule: Envelope Protein
Chain: B, A
Fragment: Unp Residues 280-674
Engineered: Yes
Organism_scientific: Dengue Virus 4
Organism_taxid: 11070
Strain: Myanmar 1976
Gene: Envelope
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227
Expression_system_strain: Schneider 2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt351

Molecule: Heavy Chain, Monoclonal Antibody 5h2
Chain: H, C
Fragment: Fab
Engineered: Yes

Organism_scientific: Pan Troglodytes
Organism_common: Chimpanzee
Organism_taxid: 9598
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell_line: Ovary (Cho)
Expression_system_vector_type: Phagemid
Expression_system_plasmid: Pcomb3h

Molecule: Light Chain, Monoclonal Antibody 5h2
Chain: L, D
Fragment: Fab
Engineered: Yes

Organism_scientific: Pan Troglodytes
Organism_common: Chimpanzee
Organism_taxid: 9598
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell_line: Ovary (Cho)
Expression_system_vector_type: Phagemid
Expression_system_plasmid: Pcomb3h
symmetry Space Group: P 1 21 1
R_factor 0.241 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.110 134.750 106.080 90.00 106.70 90.00
method X-Ray Diffractionresolution 3.23 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural insights into the neutralization mechanism of a higher primate antibody against dengue virus., Cockburn JJ, Navarro Sanchez ME, Goncalvez AP, Zaitseva E, Stura EA, Kikuti CM, Duquerroy S, Dussart P, Chernomordik LV, Lai CJ, Rey FA, EMBO J. 2011 Dec 2. doi: 10.1038/emboj.2011.439. PMID:22139356
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (252 Kb) [Save to disk]
  • Biological Unit Coordinates (3uaj.pdb1.gz) 245 Kb
  • LPC: Ligand-Protein Contacts for 3UAJ
  • CSU: Contacts of Structural Units for 3UAJ
  • Structure Factors (1538 Kb)
  • Retrieve 3UAJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UAJ from S2C, [Save to disk]
  • Re-refined 3uaj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UAJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UAJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UAJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uaj_A] [3uaj_H] [3uaj_D] [3uaj] [3uaj_C] [3uaj_L] [3uaj_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3UAJ: [IG_like] [IGv ] by SMART
  • Other resources with information on 3UAJ
  • Community annotation for 3UAJ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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