3UD9	Hormone	date	Oct 27, 2011
title	Crystal Structure Analysis Of Fgf1-Disaccharide(Ni23) Comple
authors	S.C.Hung, Z.Shi
compound		source
Molecule: Heparin-Binding Growth Factor 1 Chain: A, B, C Synonym: Hbgf-1, Acidic Fibroblast Growth Factor, Afgf, Bet Endothelial Cell Growth Factor, Ecgf-Beta; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Gene: Fgf1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21b
symmetry	Space Group: C 1 2 1	R_factor 0.212 R_Free 0.252
crystal cell	length a length b length c angle alpha angle beta angle gamma 113.574 46.930 96.708 90.00 125.71 90.00
method	X-Ray Diffraction	resolution	2.34 Å
ligand	IDY, PO4, SGN	enzyme
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Divergent synthesis of 48 heparan sulfate-based disaccharides and probing the specific sugar-fibroblast growth factor-1 interaction., Hu YP, Zhong YQ, Chen ZG, Chen CY, Shi Z, Zulueta MM, Ku CC, Lee PY, Wang CC, Hung SC, J Am Chem Soc. 2012 Dec 26;134(51):20722-7. doi: 10.1021/ja3090065. Epub 2012 Dec, 14. PMID:23240683

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk] Biological Unit Coordinates (3ud9.pdb1.gz) 43 Kb Biological Unit Coordinates (3ud9.pdb2.gz) 44 Kb Biological Unit Coordinates (3ud9.pdb3.gz) 44 Kb LPC: Ligand-Protein Contacts for 3UD9 CSU: Contacts of Structural Units for 3UD9 Structure Factors (259 Kb) Retrieve 3UD9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3UD9 from S2C, [Save to disk] Re-refined 3ud9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3UD9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3UD9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3UD9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ud9] [3ud9_C] [3ud9_B] [3ud9_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3UD9: [FGF ] by SMART

Other resources with information on 3UD9

Community annotation for 3UD9 at PDBWiki (http://pdbwiki.org)

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