3UF8 Isomerase, Protein Binding date Oct 31, 2011
title Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans With A G95a Surface Mutation From Burkholderia Pseudomallei With Fk506
authors Seattle Structural Genomics Center For Infectious Disease (S
compound source
Molecule: Ubiquitin-Like Protein Smt3, Peptidyl-Prolyl Cis- Isomerase;
Chain: A
Fragment: Q12306 Residues 13-98, Q3jk38 Residues 2-113
Ec: 5.2.1.8
Engineered: Yes
Mutation: Yes
Other_details: Fusion Protein
Organism_scientific: Saccharomyces Cerevisiae, Burkholderia Pseudomallei;
Organism_common: Baker'S Yeast
Organism_taxid: 559292, 320372
Strain: 1710b, S288c
Gene: Burps1710b_a0907, Smt3, Ydr510w, D9719.15
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Hissmt
symmetry Space Group: P 1 21 1
R_factor 0.156 R_Free 0.183
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.400 32.770 76.990 90.00 90.59 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand FK5 enzyme Isomerase E.C.5.2.1.8 BRENDA
Gene BURPS1710B
Gene
Ontology
ChainFunctionProcessComponent
A
  • peptidyl-prolyl cis-trans is...


  • Primary referenceA structural biology approach enables the development of antimicrobials targeting bacterial immunophilins., Begley DW, Fox D 3rd, Jenner D, Juli C, Pierce PG, Abendroth J, Muruthi M, Safford K, Anderson V, Atkins K, Barnes SR, Moen SO, Raymond AC, Stacy R, Myler PJ, Staker BL, Harmer NJ, Norville IH, Holzgrabe U, Sarkar-Tyson M, Edwards TE, Lorimer DD, Antimicrob Agents Chemother. 2014 Mar;58(3):1458-67. doi: 10.1128/AAC.01875-13., Epub 2013 Dec 23. PMID:24366729
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (3uf8.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 3UF8
  • CSU: Contacts of Structural Units for 3UF8
  • Structure Factors (410 Kb)
  • Retrieve 3UF8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UF8 from S2C, [Save to disk]
  • Re-refined 3uf8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UF8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UF8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UF8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uf8] [3uf8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3UF8: [UBQ ] by SMART
  • Other resources with information on 3UF8
  • Community annotation for 3UF8 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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