3UFX	Ligase	date	Nov 01, 2011
title	Thermus Aquaticus Succinyl-Coa Synthetase In Complex With Gd
authors	M.E.Fraser
compound		source
Molecule: Succinyl-Coa Synthetase Alpha Subunit Chain: A, D, F, H Synonym: Succinyl-Coa Ligase Alpha Subunit Ec: 6.2.1.- Engineered: Yes		Organism_scientific: Thermus Aquaticus Organism_taxid: 271 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Succinyl-Coa Synthetase Beta Subunit Chain: B, E, G, I Synonym: Succinyl-Coa Ligase Beta Subunit Ec: 6.2.1.- Engineered: Yes		Organism_scientific: Thermus Aquaticus Organism_taxid: 271 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.204 R_Free 0.245
crystal cell	length a length b length c angle alpha angle beta angle gamma 261.700 126.800 110.600 90.00 112.76 90.00
method	X-Ray Diffraction	resolution	2.35 Å
ligand	GDP, MN	enzyme	Ligase E.C.6.2.1 BRENDA
Gene Ontology	Chain Function Process Component H, F, A, D I, G, E, B
Primary reference	Biochemical and structural characterization of the GTP-preferring succinyl-CoA synthetase from Thermus aquaticus., Joyce MA, Hayakawa K, Wolodko WT, Fraser ME, Acta Crystallogr D Biol Crystallogr. 2012 Jul;68(Pt 7):751-62. doi:, 10.1107/S0907444912010852. Epub 2012 Jun 15. PMID:22751660

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (415 Kb) [Save to disk] Biological Unit Coordinates (3ufx.pdb1.gz) 208 Kb Biological Unit Coordinates (3ufx.pdb2.gz) 206 Kb Biological Unit Coordinates (3ufx.pdb3.gz) 108 Kb Biological Unit Coordinates (3ufx.pdb4.gz) 107 Kb Biological Unit Coordinates (3ufx.pdb5.gz) 106 Kb Biological Unit Coordinates (3ufx.pdb6.gz) 107 Kb LPC: Ligand-Protein Contacts for 3UFX CSU: Contacts of Structural Units for 3UFX Structure Factors (1149 Kb) Retrieve 3UFX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3UFX from S2C, [Save to disk] Re-refined 3ufx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3UFX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3UFX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3UFX, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ufx_G] [3ufx_D] [3ufx_E] [3ufx_A] [3ufx_B] [3ufx_F] [3ufx] [3ufx_I] [3ufx_H] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3UFX: [CoA_binding ] by SMART

Other resources with information on 3UFX

Community annotation for 3UFX at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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