3UG2 Transferase Transferase Inhibitor date Nov 02, 2011
title Crystal Structure Of The Mutated Egfr Kinase Domain (G719st Complex With Gefitinib
authors L.J.Parker, N.Handa, S.Yoshikawa, M.Kukimoto-Niino, M.Shirouzu, S
compound source
Molecule: Epidermal Growth Factor Receptor
Chain: A
Fragment: Kinase Domain, Unp Residues 695-1022
Synonym: Proto-Oncogene C-Erbb-1, Receptor Tyrosine-Protein Erbb-1;
Ec: 2.7.10.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Egfr, Erbb1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac_ht_c
symmetry Space Group: I 2 3
R_factor 0.186 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
143.675 143.675 143.675 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand IRE, MES enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for the altered drug sensitivities of non-small cell lung cancer-associated mutants of human epidermal growth factor receptor., Yoshikawa S, Kukimoto-Niino M, Parker L, Handa N, Terada T, Fujimoto T, Terazawa Y, Wakiyama M, Sato M, Sano S, Kobayashi T, Tanaka T, Chen L, Liu ZJ, Wang BC, Shirouzu M, Kawa S, Semba K, Yamamoto T, Yokoyama S, Oncogene. 2012 Feb 20. doi: 10.1038/onc.2012.21. PMID:22349823
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (3ug2.pdb1.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 3UG2
  • CSU: Contacts of Structural Units for 3UG2
  • Structure Factors (897 Kb)
  • Retrieve 3UG2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UG2 from S2C, [Save to disk]
  • Re-refined 3ug2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UG2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UG2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UG2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ug2] [3ug2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3UG2: [TyrKc ] by SMART
  • Other resources with information on 3UG2
  • Community annotation for 3UG2 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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