3UNK Transferase Transferase Inhibitor date Nov 15, 2011
title Cdk2 In Complex With Inhibitor Yl5-083
authors J.Y.Zhu, M.P.Martin, R.Alam, E.Schonbrunn
compound source
Molecule: Cyclin-Dependent Kinase 2
Chain: A
Synonym: Cell Division Protein Kinase 2, P33 Protein Kinase
Ec: 2.7.11.22
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Tuner(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p-1
symmetry Space Group: P 21 21 21
R_factor 0.180 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.950 72.020 72.370 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 0BY, PO4 enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA novel mechanism by which small molecule inhibitors induce the DFG flip in Aurora A., Martin MP, Zhu JY, Lawrence H, Pireddu R, Luo Y, Alam R, Ozcan S, Sebti SM, Lawrence NJ, Schonbrunn E, ACS Chem Biol. 2012 Jan 16. PMID:22248356
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (3unk.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 3UNK
  • CSU: Contacts of Structural Units for 3UNK
  • Structure Factors (125 Kb)
  • Retrieve 3UNK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UNK from S2C, [Save to disk]
  • Re-refined 3unk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UNK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UNK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UNK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3unk_A] [3unk]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3UNK: [S_TKc ] by SMART
  • Other resources with information on 3UNK
  • Community annotation for 3UNK at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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