3UPG Membrane Protein date Nov 18, 2011
title Loop Deletion Mutant Of Salmonella Typhi Osmoporin (Ompc):An Membrane Protein.
authors P.Prasanth, B.K.Putcha, A.Arockiasamy, S.Krishnaswamy
compound source
Molecule: Outer Membrane Protein C
Chain: A
Synonym: Porin Ompc
Engineered: Yes
 Organism_scientific: Salmonella Enterica Subsp. Enterica Se Typhimurium;
Organism_taxid: 90371
Strain: Ty21a
Gene: Ompc, Stm2267
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-21b(+)
symmetry Space Group: P 63 2 2
R_factor 0.288 R_Free 0.325
crystal
cell
length a length b length c angle alpha angle beta angle gamma
115.149 115.149 216.736 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.20 Å
ligand CA, CL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (3upg.pdb1.gz) 305 Kb
  • LPC: Ligand-Protein Contacts for 3UPG
  • CSU: Contacts of Structural Units for 3UPG
  • Structure Factors (352 Kb)
  • Retrieve 3UPG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UPG from S2C, [Save to disk]
  • Re-refined 3upg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3UPG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3UPG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UPG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3upg_A] [3upg]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3UPG
  • Community annotation for 3UPG at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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