3US8 Oxidoreductase date Nov 23, 2011
title Crystal Structure Of An Isocitrate Dehydrogenase From Sinorh Meliloti 1021
authors D.Kumaran, S.Chamala, B.Evans, R.Foti, A.Gizzi, B.Hillerich, A.Kar J.Lafleur, R.Seidel, G.Villigas, W.Zencheck, S.C.Almo, S.Swamina York Structural Genomics Research Consortium (Nysgrc)
compound source
Molecule: Isocitrate Dehydrogenase [Nadp]
Chain: A, B
Ec: 1.1.1.42
Engineered: Yes
Organism_scientific: Sinorhizobium Meliloti
Organism_common: Ensifer Meliloti
Organism_taxid: 266834
Strain: 1021
Gene: Icd, R01792, Smc00480
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a
symmetry Space Group: P 21 21 21
R_factor 0.180 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.458 96.208 146.538 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand MSE, SO4 enzyme Oxidoreductase E.C.1.1.1.42 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk]
  • Biological Unit Coordinates (3us8.pdb1.gz) 136 Kb
  • LPC: Ligand-Protein Contacts for 3US8
  • CSU: Contacts of Structural Units for 3US8
  • Structure Factors (642 Kb)
  • Retrieve 3US8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3US8 from S2C, [Save to disk]
  • Re-refined 3us8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3US8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3US8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3US8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3us8] [3us8_B] [3us8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3US8: [Iso_dh ] by SMART
  • Other resources with information on 3US8
  • Community annotation for 3US8 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science