3UVV Hormone Receptor Hormone Receptor date Nov 30, 2011
title Crystal Structure Of The Ligand Binding Domains Of The Thyro Receptor:Retinoid X Receptor Complexed With 3,3',5 Triiodo- Thyronine And 9-Cis Retinoic Acid
authors E.J.Fernandez, B.D.K.Putcha, E.Wright, J.S.Brunzelle
compound source
Molecule: Thyroid Hormone Receptor Alpha
Chain: A
Fragment: Ligand Binding Domain (Unp Residues 147-407)
Synonym: Nuclear Receptor Subfamily 1 Group A Member 1
Engineered: Yes
Organism_scientific: Gallus Gallus
Organism_common: Bantam,Chickens
Organism_taxid: 9031
Gene: Thra, Nr1a1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet 15b

Molecule: Retinoic Acid Receptor Rxr-Alpha
Chain: B
Fragment: Ligand Binding Domain (Unp Residues 225-462)
Synonym: Nuclear Receptor Subfamily 2 Group B Member 1, Ret Receptor Alpha;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rxra, Nr2b1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pacyc184
symmetry Space Group: C 2 2 21
R_factor 0.201 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
129.130 165.320 85.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.95 Å
ligand 9CR, T3 BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural basis for negative cooperativity within agonist-bound TR:RXR heterodimers., Putcha BD, Wright E, Brunzelle JS, Fernandez EJ, Proc Natl Acad Sci U S A. 2012 Apr 2. PMID:22474364
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (3uvv.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 3UVV
  • CSU: Contacts of Structural Units for 3UVV
  • Structure Factors (409 Kb)
  • Retrieve 3UVV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UVV from S2C, [Save to disk]
  • Re-refined 3uvv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UVV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UVV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UVV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uvv] [3uvv_B] [3uvv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3UVV: [HOLI ] by SMART
  • Other resources with information on 3UVV
  • Community annotation for 3UVV at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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