3UW4 Apoptosis Inhibitor date Nov 30, 2011
title Crystal Structure Of Ciap1 Bir3 Bound To Gdc0152
authors B.Maurer, S.Hymowitz
compound source
Molecule: Baculoviral Iap Repeat-Containing Protein 2, Bacu Iap Repeat-Containing Protein 4;
Chain: A
Fragment: Bir3 Residues 266-354
Synonym: C-Iap1, Iap Homolog B, Inhibitor Of Apoptosis Prot Iap-2, Hiap-2, Hiap2, Ring Finger Protein 48, Tnfr2-Traf-Si Complex Protein 2, E3 Ubiquitin-Protein Ligase Xiap, Iap-Li Protein, Ilp, Hilp, Inhibitor Of Apoptosis Protein 3, Iap-3 Hiap3, X-Linked Inhibitor Of Apoptosis Protein, X-Linked Ia
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Api1, Birc2, Ciap1, Iap2, Mihb, Rnf48, Api3, Birc4, I Xiap;
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b

Molecule: Gdc0152
Chain: Z
Engineered: Yes

Synthetic: Yes
Other_details: Synthetic Inhibitor
symmetry Space Group: P 21 21 21
R_factor 0.177 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.691 37.380 57.598 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.79 Å
ligand 0DQ, CHG, MAA, ZN enzyme
Primary referenceThe Discovery of a Potent Small-Molecule Antagonist of Inhibitor of Apoptosis (IAP) Proteins and Clinical Candidate for the Treatment of Cancer (GDC-0152)., Flygare J, Beresini M, Budha N, Chan H, Chan I, Cheeti S, Cohen F, Deshayes K, Doerner K, Eckhardt G, Elliott LO, Feng B, Franklin M, Reisner S, Gazzard L, Halladay J, Hymowitz SG, La H, Lorusso P, Maurer B, Murray L, Plise E, Quan C, Stephan JP, Young S, Tom J, Tsui V, Um J, Varfolomeev E, Vucic D, Wagner A, Wallweber H, Wang L, Ware J, Wen Z, Wong H, Wong J, Wong M, Wong S, Yu R, Zobel K, Fairbrother WJ, J Med Chem. 2012 Mar 13. PMID:22413863
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (3uw4.pdb1.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 3UW4
  • CSU: Contacts of Structural Units for 3UW4
  • Structure Factors (109 Kb)
  • Retrieve 3UW4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UW4 from S2C, [Save to disk]
  • Re-refined 3uw4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UW4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UW4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UW4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uw4_Z] [3uw4] [3uw4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3UW4: [BIR ] by SMART
  • Other resources with information on 3UW4
  • Community annotation for 3UW4 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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