3UWD Transferase date Dec 01, 2011
title Crystal Structure Of Phosphoglycerate Kinase From Bacillus A
authors H.Zheng, M.Chruszcz, P.Porebski, M.Kudritska, S.Grimshaw, A.Savch W.F.Anderson, W.Minor, Center For Structural Genomics Of Infe Diseases (Csgid)
compound source
Molecule: Phosphoglycerate Kinase
Chain: A
Ec: 2.7.2.3
Engineered: Yes
Mutation: Yes
Organism_scientific: Bacillus Anthracis
Organism_common: Anthrax,Anthrax Bacterium
Organism_taxid: 1392
Strain: Sterne
Gene: Bas4988, Ba_5367, Gbaa_5367, Pgk
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21-Codonplus(De3)-Ripl
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: C 1 2 1
R_factor 0.174 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
119.687 45.334 68.607 90.00 97.95 90.00
method X-Ray Diffractionresolution 1.68 Å
ligand BTB, CL, MG, MSE, UNL enzyme Transferase E.C.2.7.2.3 BRENDA
note 3UWD supersedes 3B2B
Genes BA, GBAA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of putative phosphoglycerate kinases from B. anthracis and C. jejuni., Zheng H, Filippova EV, Tkaczuk KL, Dworzynski P, Chruszcz M, Porebski PJ, Wawrzak Z, Onopriyenko O, Kudritska M, Grimshaw S, Savchenko A, Anderson WF, Minor W, J Struct Funct Genomics. 2012 Mar;13(1):15-26. Epub 2012 Mar 10. PMID:22403005
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk]
  • Biological Unit Coordinates (3uwd.pdb1.gz) 131 Kb
  • Biological Unit Coordinates (3uwd.pdb2.gz) 260 Kb
  • LPC: Ligand-Protein Contacts for 3UWD
  • CSU: Contacts of Structural Units for 3UWD
  • Structure Factors (911 Kb)
  • Retrieve 3UWD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UWD from S2C, [Save to disk]
  • Re-refined 3uwd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UWD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UWD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UWD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uwd] [3uwd_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3UWD
  • Community annotation for 3UWD at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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