3UX7 Toxin date Dec 04, 2011
title Crystal Structure Of A Dimeric Myotoxic Component Of The Vip Ammodytes Meridionalis Venom Reveals Determinants Of Myotox Membrane Damaging Activity
authors D.Georgieva, M.Coronado, D.Oberthuer, F.Buck, D.Duhalov, R.K.Arni C.Betzel
compound source
Molecule: Ammodytin L(1) Isoform
Chain: A, B, C, D, E, F, G, H
 Organism_scientific: Vipera Ammodytes Meridionalis
Organism_taxid: 73841
symmetry Space Group: P 1 21 1
R_factor 0.224 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.966 47.673 126.619 90.00 90.25 90.00
method X-Ray Diffractionresolution 2.97 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceCrystal structure of a dimeric Ser49 PLA(2)-like myotoxic component of the Vipera ammodytes meridionalis venomics reveals determinants of myotoxicity and membrane damaging activity., Georgieva D, Coronado M, Oberthur D, Buck F, Duhalov D, Arni RK, Betzel C, Mol Biosyst. 2012 Apr 3;8(5):1405-11. Epub 2012 Feb 23. PMID:22362132
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk]
  • Biological Unit Coordinates (3ux7.pdb1.gz) 22 Kb
  • Biological Unit Coordinates (3ux7.pdb2.gz) 22 Kb
  • Biological Unit Coordinates (3ux7.pdb3.gz) 22 Kb
  • Biological Unit Coordinates (3ux7.pdb4.gz) 22 Kb
  • Biological Unit Coordinates (3ux7.pdb5.gz) 22 Kb
  • Biological Unit Coordinates (3ux7.pdb6.gz) 22 Kb
  • Biological Unit Coordinates (3ux7.pdb7.gz) 22 Kb
  • Biological Unit Coordinates (3ux7.pdb8.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 3UX7
  • CSU: Contacts of Structural Units for 3UX7
  • Structure Factors (297 Kb)
  • Retrieve 3UX7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UX7 from S2C, [Save to disk]
  • Re-refined 3ux7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3UX7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3UX7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UX7, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ux7_F] [3ux7_D] [3ux7_B] [3ux7] [3ux7_H] [3ux7_E] [3ux7_A] [3ux7_G] [3ux7_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3UX7: [PA2c ] by SMART
    • Other resources with information on 3UX7
  • Community annotation for 3UX7 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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