3UX9 Cytokine Immune System date Dec 04, 2011
title Structural Insights Into A Human Anti-Ifn Antibody Exerting Therapeutic Potential For Systemic Lupus Erythematosus
authors S.Ouyang, L.X.Zhao, W.Liang, N.Shaw, Z.J.Liu, M.F.Liang
compound source
Molecule: Interferon Alpha-113
Chain: A, C
Synonym: Interferon 1b, Ifn-Alpha-113, Interferon Alpha-D,
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ifna1, Ifna13
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg 7

Molecule: Scfv Antibody
Chain: B, D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-22
symmetry Space Group: C 1 2 1
R_factor 0.183 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
236.225 91.945 43.633 90.00 99.75 90.00
method X-Ray Diffractionresolution 2.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceStructural insights into a human anti-IFN antibody exerting therapeutic potential for systemic lupus erythematosus., Ouyang S, Gong B, Li JZ, Zhao LX, Wu W, Zhang FS, Sun L, Wang SJ, Pan M, Li C, Liang W, Shaw N, Zheng J, Zhao GP, Wang Y, Liu ZJ, Liang M, J Mol Med (Berl). 2012 Feb 4. PMID:22307521
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (244 Kb) [Save to disk]
  • Biological Unit Coordinates (3ux9.pdb1.gz) 121 Kb
  • Biological Unit Coordinates (3ux9.pdb2.gz) 120 Kb
  • CSU: Contacts of Structural Units for 3UX9
  • Structure Factors (502 Kb)
  • Retrieve 3UX9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UX9 from S2C, [Save to disk]
  • Re-refined 3ux9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UX9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UX9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UX9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ux9_B] [3ux9_D] [3ux9] [3ux9_A] [3ux9_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3UX9: [IFabd] [IGv ] by SMART
  • Other resources with information on 3UX9
  • Community annotation for 3UX9 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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