3UXG Transcription date Dec 05, 2011
title Crystal Structure Of Rfxank
authors W.Tempel, X.Chao, C.Bian, Y.Li, C.Bountra, J.Weigelt, C.H.Arrowsmi A.M.Edwards, J.Min, Structural Genomics Consortium (Sgc)
compound source
Molecule: Dna-Binding Protein Rfxank
Chain: A
Fragment: Unp Residues 90-260
Synonym: Ankyrin Repeat Family A Protein 1, Regulatory Fact Subunit B, Rfx-B, Regulatory Factor X-Associated Ankyrin-Co Protein;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rfxank, Ankra1, Rfxb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-V2r-Prare2
Expression_system_plasmid: Pet28-Mhl

Molecule: Histone Deacetylase 4
Chain: B
Synonym: Hd4
Ec: 3.5.1.98
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Synthetic Peptide
symmetry Space Group: C 2 2 21
R_factor 0.187 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.598 98.354 99.358 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand UNX enzyme Hydrolase E.C.3.5.1.98 BRENDA
Primary referenceSequence-Specific Recognition of a PxLPxI/L Motif by an Ankyrin Repeat Tumbler Lock., Xu C, Jin J, Bian C, Lam R, Tian R, Weist R, You L, Nie J, Bochkarev A, Tempel W, Tan CS, Wasney GA, Vedadi M, Gish GD, Arrowsmith CH, Pawson T, Yang XJ, Min J, Sci Signal. 2012 May 29;5(226):ra39. PMID:22649097
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (3uxg.pdb1.gz) 61 Kb
  • Biological Unit Coordinates (3uxg.pdb2.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 3UXG
  • CSU: Contacts of Structural Units for 3UXG
  • Structure Factors (275 Kb)
  • Retrieve 3UXG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UXG from S2C, [Save to disk]
  • Re-refined 3uxg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UXG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UXG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UXG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uxg_A] [3uxg] [3uxg_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3UXG: [ANK ] by SMART
  • Other resources with information on 3UXG
  • Community annotation for 3UXG at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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