3UXP	Transferase, Lyase Dna	date	Dec 05, 2011
title	Co-Crystal Structure Of Rat Dna Polymerase Beta Mutator I260 Dna-Ddttp
authors	C.L.Gridley, J.Jaeger
compound		source
Molecule: Dna Polymerase Beta Chain: A, B Ec: 2.7.7.7, 4.2.99.- Engineered: Yes Mutation: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116 Gene: Polb Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna 5'-D(Paptpgptpgpapg)-3' Chain: P, D Engineered: Yes Other_details: Primer Dna Strand		Synthetic: Yes Other_details: Primer Dna Strand
Molecule: Dna 5'-D(Papcptpcpapcpaptpa)-3' Chain: T, E Engineered: Yes Other_details: Template Dna Strand		Synthetic: Yes Other_details: Template Dna Strand
symmetry	Space Group: P 1 21 1	R_factor 0.218 R_Free 0.292
crystal cell	length a length b length c angle alpha angle beta angle gamma 100.321 56.607 93.144 90.00 102.04 90.00
method	X-Ray Diffraction	resolution	2.72 Å
ligand	D3T, NA	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural changes in the hydrophobic hinge region adversely affect the activity and fidelity of the I260Q mutator DNA polymerase beta., Gridley CL, Rangarajan S, Firbank S, Dalal S, Sweasy JB, Jaeger J, Biochemistry. 2013 Jun 25;52(25):4422-32. doi: 10.1021/bi301368f. Epub 2013 Jun, 12. PMID:23651085

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (253 Kb) [Save to disk] Biological Unit Coordinates (3uxp.pdb1.gz) 124 Kb Biological Unit Coordinates (3uxp.pdb2.gz) 125 Kb LPC: Ligand-Protein Contacts for 3UXP CSU: Contacts of Structural Units for 3UXP Structure Factors (306 Kb) Retrieve 3UXP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3UXP from S2C, [Save to disk] Re-refined 3uxp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 3UXP

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3UXP, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3uxp_A] [3uxp_D] [3uxp_P] [3uxp_B] [3uxp_E] [3uxp_T] [3uxp] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3UXP: [HhH1] [POLXc ] by SMART

Other resources with information on 3UXP

Community annotation for 3UXP at PDBWiki (http://pdbwiki.org)

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