3UZU Transferase date Dec 07, 2011
title The Structure Of The Ribosomal Rna Small Subunit Methyltrans From Burkholderia Pseudomallei
authors Seattle Structural Genomics Center For Infectious Disease (S
compound source
Molecule: Ribosomal Rna Small Subunit Methyltransferase A
Chain: A
Synonym: 16s Rrna (Adenine(1518)-N(6)Adenine(1519)-N(6))- Dimethyltransferase, 16s Rrna Dimethyladenosine Transferase Dimethylase, S-Adenosylmethionine-6-N', N'-Adenosyl(Rrna) Dimethyltransferase;
Ec: 2.1.1.182
Engineered: Yes
Organism_scientific: Burkholderia Pseudomallei
Organism_taxid: 28450
Gene: Rsma, Ksga, Burps1710b_0874
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.180 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.190 49.340 61.160 90.00 95.91 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand EDO enzyme Transferase E.C.2.1.1.182 BRENDA
Gene BURPS1710B
Gene
Ontology
ChainFunctionProcessComponent
A
  • rRNA (adenine-N6,N6-)-dimeth...
  • rRNA methyltransferase activ...
  • rRNA (adenine) methyltransfe...
  • 16S rRNA (adenine(1518)-N(6)...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (3uzu.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 3UZU
  • CSU: Contacts of Structural Units for 3UZU
  • Structure Factors (407 Kb)
  • Retrieve 3UZU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UZU from S2C, [Save to disk]
  • Re-refined 3uzu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UZU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UZU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UZU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uzu] [3uzu_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3UZU: [rADc ] by SMART
  • Other resources with information on 3UZU
  • Community annotation for 3UZU at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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