3V01 Transferase Inhibitor date Dec 07, 2011
title Discovery Of Novel Allosteric Mek Inhibitors Possessing Clas Non-Classical Bidentate Ser212 Interactions.
authors R.Heald, P.Jackson, P.Savy, M.Jones, E.Gancia, B.Burton, R.Newman, E.Chan, J.Chan, E.Choo, M.Merchant, M.Ultsch, C.Wiesmann, M.Belvi
compound source
Molecule: Dual Specificity Mitogen-Activated Protein Kinase
Chain: A
Fragment: Unp Residues 62-393
Synonym: Map Kinase Kinase 1, Mapkk 1, Mkk1, Erk Activator Mapkerk Kinase 1, Mek 1;
Ec: 2.7.12.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Map2k1, Mek1, Prkmk1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet24b
symmetry Space Group: P 62
R_factor 0.187 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.619 81.619 129.521 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.71 Å
ligand 3V0, ATP, MG BindingDB enzyme Transferase E.C.2.7.12.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of Novel Allosteric Mitogen-Activated Protein Kinase Kinase (MEK) 1,2 Inhibitors Possessing Bidentate Ser212 Interactions., Heald RA, Jackson P, Savy P, Jones M, Gancia E, Burton B, Newman R, Boggs J, Chan E, Chan J, Choo E, Merchant M, Rudewicz P, Ultsch M, Wiesmann C, Yue Q, Belvin M, Price S, J Med Chem. 2012 May 3. PMID:22506516
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (3v01.pdb1.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 3V01
  • CSU: Contacts of Structural Units for 3V01
  • Structure Factors (197 Kb)
  • Retrieve 3V01 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V01 from S2C, [Save to disk]
  • Re-refined 3v01 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V01 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V01
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3V01, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v01_A] [3v01]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3V01: [S_TKc ] by SMART
  • Other resources with information on 3V01
  • Community annotation for 3V01 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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