3V0O Transferase Transferase Inhibitor date Dec 08, 2011
title Crystal Structure Of The Fucosylgalactoside Alpha N- Acetylgalactosaminyltransferase (Gta, Cisab Mutant L266g, G Complex With A Novel Udp-Galnac Derived Inhibitor (4gw) And Acceptor
authors M.M.Palcic, R.Jorgensen
compound source
Molecule: Histo-Blood Group Abo System Transferase
Chain: A, B
Fragment: Extracellular Catalytic Domain
Synonym: Fucosylglycoprotein 3-Alpha-Galactosyltransferase, Fucosylglycoprotein Alpha-N-Acetylgalactosaminyltransferase Glycoprotein-Fucosylgalactoside Alpha-N- Acetylgalactosaminyltransferase, Glycoprotein-Fucosylgalact Alpha-Galactosyltransferase, Histo-Blood Group A Transferas Transferase, Histo-Blood Group B Transferase, B Transferase Fucosylglycoprotein Alpha-N-Acetylgalactosaminyltransferase Form;
Ec: 2.4.1.40, 2.4.1.37
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ab0, Abo
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcw Delta 1ac
symmetry Space Group: P 21 21 2
R_factor 0.157 R_Free 0.194
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.230 151.680 52.180 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand 4GW, BHE, MN, SO4 enzyme Transferase E.C.2.4.1.40 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceBase-modified donor analogues reveal novel dynamic features of a glycosyltransferase., Jorgensen R, Pesnot T, Lee HJ, Palcic MM, Wagner GK, J Biol Chem. 2013 Jul 8. PMID:23836908
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (212 Kb) [Save to disk]
  • Biological Unit Coordinates (3v0o.pdb1.gz) 201 Kb
  • LPC: Ligand-Protein Contacts for 3V0O
  • CSU: Contacts of Structural Units for 3V0O
  • Structure Factors (1409 Kb)
  • Retrieve 3V0O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V0O from S2C, [Save to disk]
  • Re-refined 3v0o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V0O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V0O
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3V0O, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v0o_B] [3v0o] [3v0o_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3V0O
  • Community annotation for 3V0O at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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