3V3J Lyase date Dec 13, 2011
title Kinetic And Structural Studies Of Thermostabilized Mutants O
authors C.D.Boone, S.Z.Fisher, R.Mckenna
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Synonym: Carbonate Dehydratase II, Carbonic Anhydrase C, Ca Carbonic Anhydrase II, Ca-II;
Ec: 4.2.1.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.183 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.199 71.577 73.649 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.63 Å
ligand ZN enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceKinetic and structural characterization of thermostabilized mutants of human carbonic anhydrase II., Fisher Z, Boone CD, Biswas SM, Venkatakrishnan B, Aggarwal M, Tu C, Agbandje-McKenna M, Silverman D, McKenna R, Protein Eng Des Sel. 2012 Jul;25(7):347-55. Epub 2012 Jun 12. PMID:22691706
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (3v3j.pdb1.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 3V3J
  • CSU: Contacts of Structural Units for 3V3J
  • Structure Factors (166 Kb)
  • Retrieve 3V3J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V3J from S2C, [Save to disk]
  • Re-refined 3v3j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V3J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V3J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3V3J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v3j] [3v3j_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3V3J: [Carb_anhydrase ] by SMART
  • Other resources with information on 3V3J
  • Community annotation for 3V3J at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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