3V3Z Electron Transport date Dec 14, 2011
title I(L177)H Mutant Structure Of Photosynthetic Reaction Center Rhodobacter Sphaeroides
authors A.G.Gabdulkhakov, T.Y.Fufina, L.G.Vasilieva, V.A.Shuvalov
compound source
Molecule: Reaction Center Protein H Chain
Chain: H
Synonym: Photosynthetic Reaction Center H Subunit
Engineered: Yes
Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 1063
Gene: Puha
Expression_system: Rhodobacter Sphaeroides
Expression_system_taxid: 1063
Expression_system_strain: Dd13
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prehd-I(L177)H

Molecule: Reaction Center Protein L Chain
Chain: L
Synonym: Photosynthetic Reaction Center L Subunit
Engineered: Yes
Mutation: Yes

Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 1063
Gene: Pufl
Expression_system: Rhodobacter Sphaeroides
Expression_system_taxid: 1063
Expression_system_strain: Dd13
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prehd-I(L177)H

Molecule: Reaction Center Protein M Chain
Chain: M
Synonym: Photosynthetic Reaction Center M Subunit
Engineered: Yes

Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 1063
Gene: Pufm
Expression_system: Rhodobacter Sphaeroides
Expression_system_taxid: 1063
Expression_system_strain: Dd13
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prehd-I(L177)H
symmetry Space Group: P 31 2 1
R_factor 0.204 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
140.130 140.130 186.030 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
ligand BCL, BPH, CL, DIO, FE, HTO, K, LDA, PO4, SPN, U10 enzyme
Gene
Ontology
ChainFunctionProcessComponent
H
  • electron transporter, transf...


  • L


    M


    Primary referenceThe site-directed mutation I(L177)H in Rhodobacter sphaeroides reaction center affects coordination of P(A) and B(B) bacteriochlorophylls., Vasilieva LG, Fufina TY, Gabdulkhakov AG, Leonova MM, Khatypov RA, Shuvalov VA, Biochim Biophys Acta. 2012 Feb 15. PMID:22365928
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (154 Kb) [Save to disk]
  • Biological Unit Coordinates (3v3z.pdb1.gz) 144 Kb
  • LPC: Ligand-Protein Contacts for 3V3Z
  • CSU: Contacts of Structural Units for 3V3Z
  • Structure Factors (371 Kb)
  • Retrieve 3V3Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V3Z from S2C, [Save to disk]
  • Re-refined 3v3z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V3Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V3Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3V3Z, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v3z] [3v3z_H] [3v3z_M] [3v3z_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3V3Z
  • Community annotation for 3V3Z at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
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