3V5G Lyase Lyase Inhibitor date Dec 16, 2011
title Crystal Structure Of Human Carbonic Anhydrase II In Complex 4-Sulfamido-Benzenesulfonamide Inhibitor
authors K.D'Ambrosio, G.De Simone
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Synonym: Carbonate Dehydratase II, Carbonic Anhydrase C, Ca Carbonic Anhydrase II, Ca-II;
Ec: 4.2.1.1
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.186 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.250 41.350 71.960 90.00 104.36 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand 0F3, HGB, MBO, ZN BindingDB enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDevelopment of Potent Carbonic Anhydrase Inhibitors Incorporating Both Sulfonamide and Sulfamide Groups., D'Ambrosio K, Smaine FZ, Carta F, De Simone G, Winum JY, Supuran CT, J Med Chem. 2012 Jul 20. PMID:22775345
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (3v5g.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 3V5G
  • CSU: Contacts of Structural Units for 3V5G
  • Structure Factors (469 Kb)
  • Retrieve 3V5G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V5G from S2C, [Save to disk]
  • Re-refined 3v5g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3V5G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3V5G
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3V5G, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v5g_A] [3v5g]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3V5G: [Carb_anhydrase ] by SMART
    • Other resources with information on 3V5G
  • Community annotation for 3V5G at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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