3V5H Immune System date Dec 16, 2011
title Hla-A2.1 Kvaeivhfl
authors E.J.Collins, H.Y.Lee
compound source
Molecule: Hla Class I Histocompatibility Antigen, A-2 Alpha
Chain: A, D
Synonym: Mhc Class I Antigen A2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla0201, Hla-A, Hlaa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Plm1

Molecule: Beta-2-Microglobulin
Chain: B, E
Synonym: Beta-2-Microglobulin Form Pi 5.3
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Beta-2-Microglobulin, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Plm1

Molecule: Hiv-Based Altered-Peptide Ligand Kvaeivhfl
Chain: C, F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Human
Organism_common: Homo Sapiens
Organism_taxid: 9606
Other_details: Chemically Synthesized Peptide Based On Sequ Hiv
symmetry Space Group: P 1 21 1
R_factor 0.184 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.798 87.604 79.769 90.00 89.96 90.00
method X-Ray Diffractionresolution 1.63 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
E, B
  • cellular response to iron io...

  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (287 Kb) [Save to disk]
  • Biological Unit Coordinates (3v5h.pdb1.gz) 141 Kb
  • Biological Unit Coordinates (3v5h.pdb2.gz) 142 Kb
  • LPC: Ligand-Protein Contacts for 3V5H
  • CSU: Contacts of Structural Units for 3V5H
  • Structure Factors (1389 Kb)
  • Retrieve 3V5H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V5H from S2C, [Save to disk]
  • Re-refined 3v5h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V5H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V5H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3V5H, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v5h_F] [3v5h_E] [3v5h_C] [3v5h_D] [3v5h_B] [3v5h_A] [3v5h]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3V5H: [IGc1 ] by SMART
  • Other resources with information on 3V5H
  • Community annotation for 3V5H at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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