3V6R Transferase Transferase Inhibitor date Dec 20, 2011
title Discovery Of Potent And Selective Covalent Inhibitors Of Jnk
authors H.Park, P.V.Lograsso, J.D.Laughlin
compound source
Molecule: Mitogen-Activated Protein Kinase 10
Chain: A, B
Synonym: Map Kinase 10, Mapk 10, Map Kinase P49 3f12, Stres Activated Protein Kinase 1b, Sapk1b, Stress-Activated Prote Jnk3, C-Jun N-Terminal Kinase 3;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk10, Jnk3, Jnk3a, Prkm10, Sapk1b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.207 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.297 157.259 44.108 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand CQQ enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery of potent and selective covalent inhibitors of JNK., Zhang T, Inesta-Vaquera F, Niepel M, Zhang J, Ficarro SB, Machleidt T, Xie T, Marto JA, Kim N, Sim T, Laughlin JD, Park H, LoGrasso PV, Patricelli M, Nomanbhoy TK, Sorger PK, Alessi DR, Gray NS, Chem Biol. 2012 Jan 27;19(1):140-54. PMID:22284361
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (249 Kb) [Save to disk]
  • Biological Unit Coordinates (3v6r.pdb1.gz) 122 Kb
  • Biological Unit Coordinates (3v6r.pdb2.gz) 122 Kb
  • LPC: Ligand-Protein Contacts for 3V6R
  • CSU: Contacts of Structural Units for 3V6R
  • Structure Factors (427 Kb)
  • Retrieve 3V6R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V6R from S2C, [Save to disk]
  • Re-refined 3v6r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V6R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V6R
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3V6R, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v6r] [3v6r_B] [3v6r_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3V6R: [S_TKc ] by SMART
  • Other resources with information on 3V6R
  • Community annotation for 3V6R at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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