3V8B Oxidoreductase date Dec 22, 2011
title Crystal Structure Of A 3-Ketoacyl-Acp Reductase From Sinorhi Meliloti 1021
authors D.Kumaran, S.Chamala, B.Evans, R.Foti, A.Gizzi, B.Hillerich, A.Kar J.Lafleur, R.Seidel, G.Villigas, W.Zencheck, S.C.Almo, S.Swamina York Structural Genomics Research Consortium (Nysgrc)
compound source
Molecule: Putative Dehydrogenase, Possibly 3-Oxoacyl-[Acyl- Protein] Reductase;
Chain: A, B, C, D
Ec: 1.1.1.100
Engineered: Yes
Organism_scientific: Sinorhizobium Meliloti
Organism_taxid: 266834
Strain: 1021
Gene: Rb1300, Sm_b21474
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a
symmetry Space Group: P 21 21 2
R_factor 0.187 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.787 143.916 66.710 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand MSE enzyme Oxidoreductase E.C.1.1.1.100 BRENDA
Gene SM
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk]
  • Biological Unit Coordinates (3v8b.pdb1.gz) 151 Kb
  • LPC: Ligand-Protein Contacts for 3V8B
  • CSU: Contacts of Structural Units for 3V8B
  • Structure Factors (435 Kb)
  • Retrieve 3V8B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V8B from S2C, [Save to disk]
  • Re-refined 3v8b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V8B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V8B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3V8B, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v8b_D] [3v8b_B] [3v8b] [3v8b_A] [3v8b_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3V8B
  • Community annotation for 3V8B at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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