3V8G	Transport Protein	date	Dec 22, 2011
title	Crystal Structure Of An Asymmetric Trimer Of A Glutamate Tra Homologue (Gltph)
authors	G.Verdon, O.Boudker
compound		source
Molecule: Sodium-Coupled L-Aspartate Transporter Chain: A, B, C, D, E, F Synonym: Hypothetical Proton Glutamate Symport Protein Engineered: Yes Mutation: Yes		Organism_scientific: Pyrococcus Horikoshii Organism_taxid: 70601 Strain: Atcc 700860 Dsm 12428 Jcm 9974 Nbrc 100139 Gene: O59010, Ph1295 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.255 R_Free 0.294
crystal cell	length a length b length c angle alpha angle beta angle gamma 203.692 119.627 223.415 90.00 113.77 90.00
method	X-Ray Diffraction	resolution	4.66 Å
ligand	ASP, NA	enzyme
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Crystal structure of an asymmetric trimer of a bacterial glutamate transporter homolog., Verdon G, Boudker O, Nat Struct Mol Biol. 2012 Feb 12;19(3):355-7. doi: 10.1038/nsmb.2233. PMID:22343718

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (796 Kb) [Save to disk] Biological Unit Coordinates (3v8g.pdb1.gz) 398 Kb Biological Unit Coordinates (3v8g.pdb2.gz) 393 Kb LPC: Ligand-Protein Contacts for 3V8G CSU: Contacts of Structural Units for 3V8G Structure Factors (142 Kb) Retrieve 3V8G in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3V8G from S2C, [Save to disk] Re-refined 3v8g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3V8G in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3V8G

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3V8G, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3v8g_A] [3v8g_E] [3v8g_D] [3v8g_F] [3v8g_C] [3v8g] [3v8g_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3V8G

Community annotation for 3V8G at PDBWiki (http://pdbwiki.org)

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