3V9M Hydrolase date Dec 27, 2011
title Phospholipase Acii4 From Australian King Brown Snake
authors L.W.Guddat, E.K.Millers
compound source
Molecule: Phospholipase A2 Isozyme Pa-11
Chain: A, B
Synonym: Phosphatidylcholine 2-Acylhydrolase
Ec: 3.1.1.4
Organism_scientific: Pseudechis Australis
Organism_common: King Brown Snake
Organism_taxid: 8670
symmetry Space Group: P 31
R_factor 0.188 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.380 82.380 28.900 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.56 Å
ligand CA, EDO, PEG, SO4 enzyme Hydrolase E.C.3.1.1.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (3v9m.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 3V9M
  • CSU: Contacts of Structural Units for 3V9M
  • Structure Factors (193 Kb)
  • Retrieve 3V9M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V9M from S2C, [Save to disk]
  • Re-refined 3v9m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V9M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V9M
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3V9M, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v9m_B] [3v9m] [3v9m_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3V9M: [PA2c ] by SMART
  • Other resources with information on 3V9M
  • Community annotation for 3V9M at PDBWiki (http://pdbwiki.org)

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