3VBZ Toxin date Jan 03, 2012
title Crystal Structure Of Taipoxin Beta Subunit Isoform 2
authors L.Cendron, I.Micetic, P.Polverino, M.Beltramini, M.Paoli
compound source
Molecule: Phospholipase A2 Homolog, Taipoxin Beta Chain
Chain: A, B
Ec: 3.1.1.4
Organism_scientific: Oxyuranus Scutellatus Scutellatus
Organism_common: Australian Taipan
Organism_taxid: 8667
Secretion: Venom
symmetry Space Group: P 1 21 1
R_factor 0.182 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.570 36.480 65.560 90.00 110.09 90.00
method X-Ray Diffractionresolution 1.76 Å
ligand
enzyme Hydrolase E.C.3.1.1.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural analysis of trimeric phospholipase A(2) neurotoxin from the Australian taipan snake venom., Cendron L, Micetic I, Polverino de Laureto P, Paoli M, FEBS J. 2012 Jul 6. doi: 10.1111/j.1742-4658.2012.08691.x. PMID:22776098
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (3vbz.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (3vbz.pdb2.gz) 40 Kb
  • Biological Unit Coordinates (3vbz.pdb3.gz) 78 Kb
  • CSU: Contacts of Structural Units for 3VBZ
  • Structure Factors (887 Kb)
  • Retrieve 3VBZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VBZ from S2C, [Save to disk]
  • Re-refined 3vbz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VBZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VBZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VBZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vbz] [3vbz_A] [3vbz_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3VBZ: [PA2c ] by SMART
  • Other resources with information on 3VBZ
  • Community annotation for 3VBZ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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