3VFM Immune System date Jan 10, 2012
title Crystal Structure Of Hla B3508 Lpep155a, Hla Mutant Ala155
authors Y.C.Liu, J.Rossjohn, S.Gras
compound source
Molecule: Mhc Class I Antigen
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-B
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30

Molecule: Beta-2-Microglobulin
Chain: B
Synonym: Beta-2-Microglobulin Form Pi 5.3
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30

Molecule: Lpep Peptide From Ebv, Lpeplpqgqltay
Chain: C
Engineered: Yes

Synthetic: Yes
Other_details: Gl Biochem
symmetry Space Group: P 21 21 21
R_factor 0.191 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.384 81.909 112.256 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceThe energetic basis underpinning T-cell teceptor tecognition of a super-bulged peptide bound to a major histocompatibility complex class I molecule., Liu YC, Chen Z, Burrows SR, Purcell AW, McCluskey J, Rossjohn J, Gras S, J Biol Chem. 2012 Feb 16. PMID:22343629
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (3vfm.pdb1.gz) 74 Kb
  • CSU: Contacts of Structural Units for 3VFM
  • Structure Factors (526 Kb)
  • Retrieve 3VFM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VFM from S2C, [Save to disk]
  • Re-refined 3vfm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VFM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VFM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VFM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vfm_A] [3vfm_B] [3vfm] [3vfm_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3VFM: [IGc1 ] by SMART
  • Other resources with information on 3VFM
  • Community annotation for 3VFM at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science