3VG9 Signaling Protein date Aug 04, 2011
title Crystal Structure Of Human Adenosine A2a Receptor With An Al Inverse-Agonist Antibody At 2.7 A Resolution
authors T.Hino, T.Arakawa, H.Iwanari, T.Yurugi-Kobayashi, C.Ikeda-Suno, Y Nakura, O.Kusano-Arai, S.Weyand, T.Shimamura, N.Nomura, A.D.Came T.Kobayashi, T.Hamakubo, S.Iwata, T.Murata
compound source
Molecule: Adenosine Receptor A2a
Chain: A
Fragment: Unp Residues 1-316
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adora2a, Adora2
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppic9k

Molecule: Antibody Fab Fragment Light Chain
Chain: B

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090

Molecule: Antibody Fab Fragment Heavy Chain
Chain: C

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
symmetry Space Group: C 1 2 1
R_factor 0.206 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.180 90.150 113.550 90.00 98.10 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand LMT, STE, ZMA BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceG-protein-coupled receptor inactivation by an allosteric inverse-agonist antibody., Hino T, Arakawa T, Iwanari H, Yurugi-Kobayashi T, Ikeda-Suno C, Nakada-Nakura Y, Kusano-Arai O, Weyand S, Shimamura T, Nomura N, Cameron AD, Kobayashi T, Hamakubo T, Iwata S, Murata T, Nature. 2012 Jan 29;482(7384):237-40. doi: 10.1038/nature10750. PMID:22286059
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (247 Kb) [Save to disk]
  • Biological Unit Coordinates (3vg9.pdb1.gz) 241 Kb
  • LPC: Ligand-Protein Contacts for 3VG9
  • CSU: Contacts of Structural Units for 3VG9
  • Structure Factors (558 Kb)
  • Retrieve 3VG9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VG9 from S2C, [Save to disk]
  • Re-refined 3vg9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VG9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VG9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VG9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vg9_C] [3vg9] [3vg9_B] [3vg9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3VG9: [IG_like] [IGv ] by SMART
  • Other resources with information on 3VG9
  • Community annotation for 3VG9 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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