3VGO	Ligase	date	Aug 18, 2011
title	Crystal Structure Of The N-Terminal Fragment Of Cbl-B
authors	Y.Kobashigawa, N.N.Noda, F.Inagaki
compound		source
Molecule: E3 Ubiquitin-Protein Ligase Cbl-B Chain: A, B, C Fragment: N-Terminal Fragment, Unp Residues 39-426 Ec: 6.3.2.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cblb Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rossetta (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgbhps
symmetry	Space Group: P 31	R_factor 0.270 R_Free 0.328
crystal cell	length a length b length c angle alpha angle beta angle gamma 98.876 98.876 105.182 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.10 Å
ligand		enzyme	Ligase E.C.6.3.2 BRENDA
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Autoinhibition and phosphorylation-induced activation mechanisms of human cancer and autoimmune disease-related E3 protein Cbl-b., Kobashigawa Y, Tomitaka A, Kumeta H, Noda NN, Yamaguchi M, Inagaki F, Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20579-84. Epub 2011 Dec 7. PMID:22158902

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk] Biological Unit Coordinates (3vgo.pdb1.gz) 39 Kb Biological Unit Coordinates (3vgo.pdb2.gz) 39 Kb Biological Unit Coordinates (3vgo.pdb3.gz) 40 Kb CSU: Contacts of Structural Units for 3VGO Structure Factors (154 Kb) Retrieve 3VGO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VGO from S2C, [Save to disk] Re-refined 3vgo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VGO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3VGO

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3VGO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vgo_B] [3vgo_A] [3vgo] [3vgo_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3VGO: [RING] [SH2 ] by SMART

Other resources with information on 3VGO

Community annotation for 3VGO at PDBWiki (http://pdbwiki.org)

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