3VMR Transferase date Dec 15, 2011
title Crystal Structure Of Staphylococcus Aureus Membrane-Bound Transglycosylase In Complex With Moenomycin
authors C.Y.Huang, H.W.Shih, L.Y.Lin, Y.W.Tien, T.J.R.Cheng, W.C.Cheng, C. C.Ma
compound source
Molecule: Monofunctional Glycosyltransferase
Chain: A
Fragment: Residues 28-269
Synonym: Mgt, Peptidoglycan Tgase
Ec: 2.4.-.-
Engineered: Yes
Organism_scientific: Staphylococcus Aureus
Organism_taxid: 158878
Strain: Mu50
Gene: Mgt
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 2
R_factor 0.303 R_Free 0.309
crystal
cell
length a length b length c angle alpha angle beta angle gamma
130.423 52.852 54.585 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.69 Å
ligand M0E enzyme Transferase E.C.2.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of Staphylococcus aureus transglycosylase in complex with a lipid II analog and elucidation of peptidoglycan synthesis mechanism., Huang CY, Shih HW, Lin LY, Tien YW, Cheng TJ, Cheng WC, Wong CH, Ma C, Proc Natl Acad Sci U S A. 2012 Apr 24;109(17):6496-501. Epub 2012 Apr 9. PMID:22493270
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (3vmr.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 3VMR
  • CSU: Contacts of Structural Units for 3VMR
  • Structure Factors (76 Kb)
  • Retrieve 3VMR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VMR from S2C, [Save to disk]
  • Re-refined 3vmr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VMR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VMR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VMR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vmr_A] [3vmr]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3VMR
  • Community annotation for 3VMR at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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