3VN2	Signaling Protein	date	Dec 21, 2011
title	Crystal Structure Of Ppargamma Complexed With Telmisartan
authors	Y.Amano
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Gamma Chain: A Fragment: Ligand Biding Domain, Unp Residues 225-505 Synonym: Ppar-Gamma, Nuclear Receptor Subfamily 1 Group C M Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pparg Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Nuclear Receptor Coactivator 1 Chain: C Fragment: Coactivator Fragment Src-1, Unp Residues 685-700 Synonym: Ncoa-1, Class E Basic Helix-Loop-Helix Protein 74, Protein Hin-2, Rip160, Renal Carcinoma Antigen Ny-Ren-52, S Receptor Coactivator 1, Src-1; Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 21 21 2	R_factor 0.250 R_Free 0.309
crystal cell	length a length b length c angle alpha angle beta angle gamma 132.852 53.499 53.860 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.18 Å
ligand	TLS BindingDB	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis for telmisartan-mediated partial activation of PPAR gamma., Amano Y, Yamaguchi T, Ohno K, Niimi T, Orita M, Sakashita H, Takeuchi M, Hypertens Res. 2012 Feb 23. doi: 10.1038/hr.2012.17. PMID:22357520

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk] Biological Unit Coordinates (3vn2.pdb1.gz) 46 Kb LPC: Ligand-Protein Contacts for 3VN2 CSU: Contacts of Structural Units for 3VN2 Structure Factors (291 Kb) Retrieve 3VN2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VN2 from S2C, [Save to disk] Re-refined 3vn2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VN2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3VN2

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3VN2, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vn2] [3vn2_A] [3vn2_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3VN2: [HOLI ] by SMART

Other resources with information on 3VN2

Community annotation for 3VN2 at PDBWiki (http://pdbwiki.org)

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