3VN9 Transferase Transferase Inhibitor date Jan 05, 2012
title Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In A Auto-Inhibition State
authors T.Kinoshita, H.Matsuzaka, R.Nakai, Y.Kirii, K.Yokota, T.Tada, T.Ma
compound source
Molecule: Dual Specificity Mitogen-Activated Protein Kinase
Chain: A
Synonym: Map Kinase Kinase 6, Mapkk 6, Mapkerk Kinase 6, M Stress-Activated Protein Kinase Kinase 3, Sapk Kinase 3, Sa Sapkk3;
Ec: 2.7.12.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Map2k6
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22(+)
symmetry Space Group: P 31 2 1
R_factor 0.264 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.456 83.456 101.153 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand ANK, MG enzyme Transferase E.C.2.7.12.2 BRENDA
note 3VN9 supersedes 3AN0
Gene
Ontology
ChainFunctionProcessComponent
A
  • protein tyrosine kinase acti...


  • Primary referenceCrystal structure of non-phosphorylated MAP2K6 in a putative auto-inhibition state., Matsumoto T, Kinoshita T, Matsuzaka H, Nakai R, Kirii Y, Yokota K, Tada T, J Biochem. 2012 May;151(5):541-9. Epub 2012 Mar 1. PMID:22383536
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (3vn9.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 3VN9
  • CSU: Contacts of Structural Units for 3VN9
  • Structure Factors (178 Kb)
  • Retrieve 3VN9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VN9 from S2C, [Save to disk]
  • Re-refined 3vn9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VN9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VN9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VN9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vn9_A] [3vn9]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3VN9: [S_TKc ] by SMART
  • Other resources with information on 3VN9
  • Community annotation for 3VN9 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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