3VNT	Transferase Transferase Inhibitor	date	Jan 17, 2012
title	Crystal Structure Of The Kinase Domain Of Human Vegfr2 With 3]Thiazolo[5,4-B]Pyridine Derivative
authors	H.Oki
compound		source
Molecule: Vascular Endothelial Growth Factor Receptor 2 Chain: A Fragment: Unp Residues 806-1171 Synonym: Vegfr-2, Fetal Liver Kinase 1, Flk-1, Kinase Inser Receptor, Kdr, Protein-Tyrosine Kinase Receptor Flk-1; Ec: 2.7.10.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Kdr, Flk1, Vegfr2 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_strain: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac
symmetry	Space Group: C 1 2 1	R_factor 0.151 R_Free 0.192
crystal cell	length a length b length c angle alpha angle beta angle gamma 135.615 56.618 51.819 90.00 94.88 90.00
method	X-Ray Diffraction	resolution	1.64 Å
ligand	0JA, EDO	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Design and Synthesis of Novel DFG-Out RAF/Vascular Endothelial Growth Factor Receptor 2 (VEGFR2) Inhibitors. 1. Exploration of [5,6]-Fused Bicyclic Scaffolds., Okaniwa M, Hirose M, Imada T, Ohashi T, Hayashi Y, Miyazaki T, Arita T, Yabuki M, Kakoi K, Kato J, Takagi T, Kawamoto T, Yao S, Sumita A, Tsutsumi S, Tottori T, Oki H, Sang BC, Yano J, Aertgeerts K, Yoshida S, Ishikawa T, J Med Chem. 2012 Mar 14. PMID:22376051

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk] Biological Unit Coordinates (3vnt.pdb1.gz) 106 Kb LPC: Ligand-Protein Contacts for 3VNT CSU: Contacts of Structural Units for 3VNT Structure Factors (678 Kb) Retrieve 3VNT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VNT from S2C, [Save to disk] Re-refined 3vnt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 3VNT

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3VNT, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vnt] [3vnt_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3VNT: [TyrKc ] by SMART

Other resources with information on 3VNT

Community annotation for 3VNT at PDBWiki (http://pdbwiki.org)

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