3VO3	Transferase Transferase Inhibitor	date	Jan 19, 2012
title	Crystal Structure Of The Kinase Domain Of Human Vegfr2 With 2-B]Pyridazine Derivative
authors	H.Oki, K.Okada
compound		source
Molecule: Vascular Endothelial Growth Factor Receptor 2 Chain: A Fragment: Unp Residues 806-1171 Synonym: Vegfr-2, Fetal Liver Kinase 1, Flk-1, Kinase Inser Receptor, Kdr, Protein-Tyrosine Kinase Receptor Flk-1; Ec: 2.7.10.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Kdr, Flk1, Vegfr2 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac
symmetry	Space Group: C 1 2 1	R_factor 0.161 R_Free 0.182
crystal cell	length a length b length c angle alpha angle beta angle gamma 134.093 55.770 51.572 90.00 94.41 90.00
method	X-Ray Diffraction	resolution	1.52 Å
ligand	0KF, EDO	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Discovery of N-[5-({2-[(cyclopropylcarbonyl)amino]imidazo[1,2-b]pyridazin-6-yl}oxy)-2-methylph enyl]-1,3-dimethyl-1H-pyrazole-5-carboxamide (TAK-593), a highly potent VEGFR2 kinase inhibitor., Miyamoto N, Sakai N, Hirayama T, Miwa K, Oguro Y, Oki H, Okada K, Takagi T, Iwata H, Awazu Y, Yamasaki S, Takeuchi T, Miki H, Hori A, Imamura S, Bioorg Med Chem. 2013 Apr 15;21(8):2333-45. doi: 10.1016/j.bmc.2013.01.074. Epub , 2013 Feb 13. PMID:23498918

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk] Biological Unit Coordinates (3vo3.pdb1.gz) 106 Kb LPC: Ligand-Protein Contacts for 3VO3 CSU: Contacts of Structural Units for 3VO3 Structure Factors (817 Kb) Retrieve 3VO3 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VO3 from S2C, [Save to disk] Re-refined 3vo3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VO3 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3VO3

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3VO3, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vo3] [3vo3_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3VO3: [TyrKc ] by SMART

Other resources with information on 3VO3

Community annotation for 3VO3 at PDBWiki (http://pdbwiki.org)

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