3VRN	Protein Binding	date	Apr 13, 2012
title	Crystal Structure Of The Tyrosine Kinase Binding Domain Of C
authors	K.Takeshita, T.Tezuka, Y.Isozaki, E.Yamashita, M.Suzuki, Y.Yamana T.Yamamoto, A.Nakagawa
compound		source
Molecule: Signal Transduction Protein Cbl-C Chain: A Fragment: Tkb Domain Synonym: Ring Finger Protein 57, Sh3-Binding Protein Cbl-3, Binding Protein Cbl-C; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cblc Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dh5a Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex6p-1
symmetry	Space Group: C 2 2 21	R_factor 0.182 R_Free 0.218
crystal cell	length a length b length c angle alpha angle beta angle gamma 93.223 107.617 54.773 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.64 Å
ligand	CA	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural flexibility regulates phosphopeptide-binding activity of the tyrosine kinase binding domain of Cbl-c., Takeshita K, Tezuka T, Isozaki Y, Yamashita E, Suzuki M, Kim M, Yamanashi Y, Yamamoto T, Nakagawa A, J Biochem. 2012 Nov;152(5):487-95. doi: 10.1093/jb/mvs085. Epub 2012 Aug 9. PMID:22888118

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk] Biological Unit Coordinates (3vrn.pdb1.gz) 50 Kb LPC: Ligand-Protein Contacts for 3VRN CSU: Contacts of Structural Units for 3VRN Structure Factors (510 Kb) Retrieve 3VRN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VRN from S2C, [Save to disk] Re-refined 3vrn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VRN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3VRN

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3VRN, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vrn] [3vrn_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3VRN

Community annotation for 3VRN at PDBWiki (http://pdbwiki.org)

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