3VRQ	Protein Binding	date	Apr 13, 2012
title	Crystal Structure Of The Tyrosine Kinase Binding Domain Of C Mutant)
authors	K.Takeshita, T.Tezuka, Y.Isozaki, E.Yamashita, M.Suzuki, Y.Yamana T.Yamamoto, A.Nakagawa
compound		source
Molecule: Signal Transduction Protein Cbl-C Chain: A, B Fragment: Tyrosine Kinase Binding Domain Synonym: Ring Finger Protein 57, Sh3-Binding Protein Cbl-3, Binding Protein Cbl-C; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cblc Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dh5a Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex6p-1
symmetry	Space Group: P 1 21 1	R_factor 0.215 R_Free 0.264
crystal cell	length a length b length c angle alpha angle beta angle gamma 62.600 66.211 81.558 90.00 106.02 90.00
method	X-Ray Diffraction	resolution	2.39 Å
ligand	CA	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural flexibility regulates phosphopeptide-binding activity of the tyrosine kinase binding domain of Cbl-c., Takeshita K, Tezuka T, Isozaki Y, Yamashita E, Suzuki M, Kim M, Yamanashi Y, Yamamoto T, Nakagawa A, J Biochem. 2012 Nov;152(5):487-95. doi: 10.1093/jb/mvs085. Epub 2012 Aug 9. PMID:22888118

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk] Biological Unit Coordinates (3vrq.pdb1.gz) 46 Kb Biological Unit Coordinates (3vrq.pdb2.gz) 46 Kb Biological Unit Coordinates (3vrq.pdb3.gz) 90 Kb LPC: Ligand-Protein Contacts for 3VRQ CSU: Contacts of Structural Units for 3VRQ Structure Factors (363 Kb) Retrieve 3VRQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VRQ from S2C, [Save to disk] Re-refined 3vrq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VRQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3VRQ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3VRQ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vrq_B] [3vrq_A] [3vrq] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3VRQ

Community annotation for 3VRQ at PDBWiki (http://pdbwiki.org)

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