3VS2 Transferase Transferase Inhibitor date Apr 21, 2012
title Crystal Structure Of Hck Complexed With A Pyrrolo-Pyrimidine 7-[Cis-4-(4-Methylpiperazin-1-Yl)Cyclohexyl]-5-(4-Phenoxyph Pyrrolo[2,3-D]Pyrimidin-4-Amine
authors M.Kuratani, Y.Tomabechi, H.Niwa, J.L.Parker, N.Handa, S.Yokoyama
compound source
Molecule: Tyrosine-Protein Kinase Hck
Chain: A, B
Fragment: Unp Residues 81-526
Synonym: Hematopoietic Cell Kinase, Hemopoietic Cell Kinase Hckp60-Hck, P59hck, P61hck;
Ec: 2.7.10.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hck
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 1 21 1
R_factor 0.226 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.510 73.090 180.960 90.00 96.26 90.00
method X-Ray Diffractionresolution 2.61 Å
ligand CA, CL, PTR, VSB enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA Pyrrolo-Pyrimidine Derivative Targets Human Primary AML Stem Cells in Vivo., Saito Y, Yuki H, Kuratani M, Hashizume Y, Takagi S, Honma T, Tanaka A, Shirouzu M, Mikuni J, Handa N, Ogahara I, Sone A, Najima Y, Tomabechi Y, Wakiyama M, Uchida N, Tomizawa-Murasawa M, Kaneko A, Tanaka S, Suzuki N, Kajita H, Aoki Y, Ohara O, Shultz LD, Fukami T, Goto T, Taniguchi S, Yokoyama S, Ishikawa F, Sci Transl Med. 2013 Apr 17;5(181):181ra52. doi: 10.1126/scitranslmed.3004387. PMID:23596204
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (151 Kb) [Save to disk]
  • Biological Unit Coordinates (3vs2.pdb1.gz) 74 Kb
  • Biological Unit Coordinates (3vs2.pdb2.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 3VS2
  • CSU: Contacts of Structural Units for 3VS2
  • Structure Factors (448 Kb)
  • Retrieve 3VS2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VS2 from S2C, [Save to disk]
  • Re-refined 3vs2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VS2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VS2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VS2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vs2_A] [3vs2_B] [3vs2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3VS2: [SH2] [SH3] [TyrKc ] by SMART
  • Other resources with information on 3VS2
  • Community annotation for 3VS2 at PDBWiki (http://pdbwiki.org)

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