3VTS Toxin date Jun 06, 2012
title Crystal Structure Of A Three Finger Toxin From Snake Venom
authors C.Jobichen, J.Sivaraman
compound source
Molecule: Cytotoxin 1
Chain: A, B
Synonym: Hemolytic Protein 12b, Three Finger Toxin
Organism_scientific: Hemachatus Haemachatus
Organism_common: Ringhals
Organism_taxid: 8626
symmetry Space Group: P 21 21 21
R_factor 0.232 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.718 50.057 57.813 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.43 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • toxin activity


  • Primary referenceIdentification and structural characterization of a new three-finger toxin hemachatoxin from Hemachatus haemachatus venom., Girish VM, Kumar S, Joseph L, Jobichen C, Kini RM, Sivaraman J, PLoS One. 2012;7(10):e48112. doi: 10.1371/journal.pone.0048112. Epub 2012 Oct 29. PMID:23144733
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (3vts.pdb1.gz) 39 Kb
  • CSU: Contacts of Structural Units for 3VTS
  • Structure Factors (51 Kb)
  • Retrieve 3VTS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VTS from S2C, [Save to disk]
  • Re-refined 3vts structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VTS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VTS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VTS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vts_A] [3vts] [3vts_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3VTS
  • Community annotation for 3VTS at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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