3VVO Transport Protein date Jul 27, 2012
title Crystal Structure Of Mate In The Bent Conformation
authors Y.Tanaka, R.Ishitani, O.Nureki
compound source
Molecule: Putative Uncharacterized Protein
Chain: A
Synonym: Archaeal-Type Transporter
Engineered: Yes
Organism_scientific: Pyrococcus Furiosus
Organism_taxid: 2261
Strain: Jcm 8422
Gene: Pf0708
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C41(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: C 1 2 1
R_factor 0.207 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
152.893 58.835 71.491 90.00 93.18 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand OLC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • xenobiotic transmembrane tra...


  • Primary referenceStructural basis for the drug extrusion mechanism by a MATE multidrug transporter., Tanaka Y, Hipolito CJ, Maturana AD, Ito K, Kuroda T, Higuchi T, Katoh T, Kato HE, Hattori M, Kumazaki K, Tsukazaki T, Ishitani R, Suga H, Nureki O, Nature. 2013 Apr 11;496(7444):247-51. doi: 10.1038/nature12014. Epub 2013 Mar 27. PMID:23535598
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (3vvo.pdb1.gz) 137 Kb
  • LPC: Ligand-Protein Contacts for 3VVO
  • CSU: Contacts of Structural Units for 3VVO
  • Structure Factors (179 Kb)
  • Retrieve 3VVO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VVO from S2C, [Save to disk]
  • Re-refined 3vvo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VVO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VVO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VVO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vvo_A] [3vvo]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3VVO
  • Community annotation for 3VVO at PDBWiki (http://pdbwiki.org)

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