3VVP	Transport Protein	date	Jul 27, 2012
title	Crystal Structure Of Mate In Complex With Br-Nrf
authors	Y.Tanaka, R.Ishitani, O.Nureki
compound		source
Molecule: Putative Uncharacterized Protein Chain: A, B Synonym: Archaeal-Type Transporter Engineered: Yes		Organism_scientific: Pyrococcus Furiosus Organism_taxid: 2261 Strain: Jcm 8422 Gene: Pf0708 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: C41(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
symmetry	Space Group: P 6	R_factor 0.285 R_Free 0.326
crystal cell	length a length b length c angle alpha angle beta angle gamma 122.368 122.368 110.384 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.91 Å
ligand	BNU	enzyme
Gene Ontology	Chain Function Process Component A, B xenobiotic transmembrane tra...
Primary reference	Structural basis for the drug extrusion mechanism by a MATE multidrug transporter., Tanaka Y, Hipolito CJ, Maturana AD, Ito K, Kuroda T, Higuchi T, Katoh T, Kato HE, Hattori M, Kumazaki K, Tsukazaki T, Ishitani R, Suga H, Nureki O, Nature. 2013 Apr 11;496(7444):247-51. doi: 10.1038/nature12014. Epub 2013 Mar 27. PMID:23535598

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (245 Kb) [Save to disk] Biological Unit Coordinates (3vvp.pdb1.gz) 123 Kb Biological Unit Coordinates (3vvp.pdb2.gz) 117 Kb LPC: Ligand-Protein Contacts for 3VVP CSU: Contacts of Structural Units for 3VVP Structure Factors (157 Kb) Retrieve 3VVP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VVP from S2C, [Save to disk] Re-refined 3vvp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VVP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3VVP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3VVP, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vvp_B] [3vvp_A] [3vvp] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3VVP

Community annotation for 3VVP at PDBWiki (http://pdbwiki.org)

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